1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaagtatttttttttttactgaaccgaatgaaattcatttttcattttgattacttataactaagtagaatttcatttatttaaatgctattattttggtgcagGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAAT
species | Glycine max |
transcript | GLYMA06G09100.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAG GGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAEST: gi|18712466|gb|BM522645.1|BM522645
genomic: ACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAGgtaaagtatt ... tttggtgcagGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCA
EST: ACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAG GGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCC
genomic: ACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAGgtaaagtatt ... tttggtgcagGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCC
attacttataactaagtagaatttcatttatttaaatgctattattttggtgcagGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAAT
ttataac putative branch site (score: 2)
ttatttt putative PPT
taagtagaatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtatttttttttttactgaaccgaatgaaattcatttttcattttgattacttataactaagtagaatttcatttatttaaatgctattattttggtgcagGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG