1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...attctaaaagaaaattggtgtatgcttttctgttacttactggtatcatctgggaaggtgacatctttttttataatttatatttgctgattgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTACGGCTGTCTTTTGGAC
species | Glycine max |
transcript | GLYMA06G01520.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|22929380|gb|BU546519.1|BU546519
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|20448981|gb|BQ253105.1|BQ253105
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|58024186|gb|CX710927.1|CX710927
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|31465561|gb|CD407589.1|CD407589
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|7235104|gb|AW570363.1|AW570363
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|13312009|gb|BG405660.1|BG405660
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAEST: gi|7924646|gb|AW830672.1|AW830672
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
EST: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAG GGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
genomic: CTGAAGCTGTAAACACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGgtaagctgat ... ttgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCA
tcatctgggaaggtgacatctttttttataatttatatttgctgattgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTACGGCTGTCTTTTGGAC
tgctgat putative branch site (score: 3)
atctttttttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctaaaagaaaattggtgtatgcttttctgttacttactggtatcatctgggaaggtgacatctttttttataatttatatttgctgattgtgtgcagGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTACGGCTGTCTTTTGGAC
- - - -aagaaaa
- - - - - - - - - -gtatgct
- - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - -gggaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga