1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cccttgtctatgtttcccatctgtttttttatgcctttttcttcttgtggatagatctaattttatgctacattttttccctgcatttggcaattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATATTTGAAGCTACTTC
species | Glycine max |
transcript | GLYMA06G00230.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAG GATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAEST: gi|58023837|gb|CX710578.1|CX710578
genomic: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAGgtaattcaac ... caattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAA
EST: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAG GATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAEST: gi|13479228|gb|BG508571.1|BG508571
genomic: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAGgtaattcaac ... caattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAA
EST: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAG GATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAA
genomic: CAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAGgtaattcaac ... caattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAA
tgtggatagatctaattttatgctacattttttccctgcatttggcaattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATATTTGAAGCTACTTC
atctaat putative branch site (score: 3)
ttccc putative PPT
taattttatgctacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttgtctatgtttcccatctgtttttttatgcctttttcttcttgtggatagatctaattttatgctacattttttccctgcatttggcaattcccagGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATATTTGAAGCTACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
cccttgt
- - - - - - - -cccatct
- - - - - - - - - - - - - - -tatgcct
- - - - - - - - - - - - - - - - - - - - - tcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaca