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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaacctatctccaactgcatgttcacattactgtatcattatggtttattctagcatgctttgcccacttgatcttctaatgatagaggcattattctgcagGAAGGAGCAACAAAATTAGCAGAATCATTGCTCAAAGGAACTGAAGAGTTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA

Basic information

species Glycine max
transcript GLYMA05G32290.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32290.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 17
gtgagtaaaa---cctatctccaactgcatgtt-cacattactgtatcattatggtttattctagcatgctttgcccacttgatcttctaatgatagaggcattattctgcagGAAGGAGCAACAAAATTAGCAGAATCATTGCTCAAAGGAACTGAAGAGTTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA
|||||| |||   ||| | | | | ||| | |    ||||| || |   ||  | | |  ||  || |  | |    |||  || |  | ||||||          | ||||||| || |||  | | ||  |  | || ||| |||  ||  |  ||||| |||||||||||||| |||| |||||||| ||||||| | | |   ||   |
gtgagtgaaatttccttttttctattgcttttcattcattattggac--ttcagatgtgctcctgcctcttgtagtgactgaatgt--tgatgata----------tttgcagGATGGTGCACTACAGTTGACTAAGTCCTTGTTCAGTGGGGCCCAAGAGCTTGTGAAACTTGACTTATCTTATTGTGGACTAACATCTGAGTACATTACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctagcatgctttgcccacttgatcttctaatgatagaggcattattctgcagGAAGGAGCAACAAAATTAGCAGAATCATTGCTCAAAGGAACTGAAGAGTTTGTGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTAA
                           ttctaat  putative branch site (score: 2)
                                            ttattct  putative PPT
                              taatgata  TA-rich tract