1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...catatctttgcttagcgaggagcctccggacactggggtatgatagtttagttttaagctgtttgattgttgatgttggtattgcttcatatttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCAAACCTCTGGTTGGAG
species | Glycine max |
transcript | GLYMA05G28950.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAG GCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCEST: gi|209714074|gb|BW684528.1|BW684528
genomic: TCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGgtaagcatta ... atttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTC
EST: TCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAG GCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCEST: gi|9258815|gb|BE346962.1|BE346962
genomic: TCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGgtaagcatta ... atttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTC
EST: CCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAG GCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTC
genomic: CCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGgtaagcatta ... atttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTC
gtttagttttaagctgtttgattgttgatgttggtattgcttcatatttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCAAACCTCTGGTTGGAG
tgttgat putative branch site (score: 4)
tatttct putative PPT
ttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatctttgcttagcgaggagcctccggacactggggtatgatagtttagttttaagctgtttgattgttgatgttggtattgcttcatatttctgcagGCAGCCGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCAAACCTCTGGTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - tgcttag
- - - - - - - - - - -gcctccg
- - - - - - - - - - - - - - gacactg
- - - - - - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg