1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gcatggaaccctctatccctcatacttacataaacaatttagtactaaaattacaaacttacattgttgttgttgtttcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGGAAGCAGTAGGCAATGTGAGGAAGCTCACTAAACTAGACATGAAACTTA
species | Glycine max |
transcript | GLYMA05G27840.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TAGGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAG GCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGEST: gi|5688143|gb|AI941158.1|AI941158
genomic: TAGGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAGgcatggaacc ... tcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTG
EST: GGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAG GCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGEST: gi|11688731|gb|BF596407.1|BF596407
genomic: GGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAGgcatggaacc ... tcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTG
EST: GAACACTAGGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAG GCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTG
genomic: GAACACTAGGCAAGGCTGGTGGTGCTTTATCCATAGCTTTTGTGAGCAAGgcatggaacc ... tcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTG
aacaatttagtactaaaattacaaacttacattgttgttgttgtttcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGGAAGCAGTAGGCAATGTGAGGAAGCTCACTAAACTAGACATGAAACTTA
ttgtttc CT-rich tract
tttagtactaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatggaaccctctatccctcatacttacataaacaatttagtactaaaattacaaacttacattgttgttgttgtttcacaaacagGCAGCTGTAGACCAGAGAGTACATGCTCTATACGGACTGAACAAGAGGGTGGAAGCAGTAGGCAATGTGAGGAAGCTCACTAAACTAGACATGAAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA