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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggtaatttttagtttaaatatattatttttccagtgtaatgttatttctgaaaattgtttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG

Basic information

species Glycine max
transcript GLYMA05G03970.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105762|gb|BI893502.1|BI893502
EST:     CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
genomic: CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
EST: gi|23729024|gb|BU762588.1|BU762588
EST:     CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
genomic: CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
EST: gi|6845818|gb|AW348108.1|AW348108
EST:     TAAATTTGATATGCACANN                         NAAAAGCGTGCAGCAAGGAAAGATCGNNNNGGTGAAGAGGAGACATGGCAG
genomic: TAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
EST: gi|31310152|gb|CD395355.1|CD395355
EST:     GAGTTCTTTTGCTCTTAAATGTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
genomic: GAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
EST: gi|19347362|gb|BM892242.1|BM892242
EST:     CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG                         AAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG
genomic: CCAAAAAGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatttttccagtgtaatgttatttctgaaaattgtttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG
                                      tttcttta  CT-rich tract
                      ttatttctgaaaattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaggtaatttttagtttaaatatattatttttccagtgtaatgttatttctgaaaattgtttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGTTCTGGTGAAGAGGAGACATGGCAGTTATCACGTTTTTATCCCATAATAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA