1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tccatagtcgggttggtgtaatttatggcagtgttagttgatctctccttatatatttggtccaatttatgttgttataactagaagacctgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAA
species | Glycine max |
transcript | GLYMA03G40000.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAG GTATGGACGACTGGAACAATGGGAGAACTAAEST: gi|16996517|gb|BM085889.1|BM085889
genomic: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGgttcacatat ... tgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAA
EST: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAG GTATGGACGACTGGAACAATGGGAGAACTAAEST: gi|6724770|gb|AW309169.1|AW309169
genomic: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGgttcacatat ... tgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAA
EST: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAA GTATGGACGACTGGAACAATGGGAGAACTAAG
genomic: TCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGgttcacatat ... tgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAAG
tccttatatatttggtccaatttatgttgttataactagaagacctgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAA
ttataac putative branch site (score: 2)
cctgtctt putative PPT
aatttatgttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatagtcgggttggtgtaatttatggcagtgttagttgatctctccttatatatttggtccaatttatgttgttataactagaagacctgtcttgaagGTATGGACGACTGGAACAATGGGAGAACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA