Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatatttgacttttgtcatgtcattacttagagattcaataatgatatgaccagttgttagattttatgttatcaagttaagtttagcattgctcattcattgttgctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTT

Basic information

species Glycine max
transcript GLYMA03G35020.2
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 17
-------------------gta-atcatatttgacttttgtcatgtcattacttagagattcaataatgatatgaccagttgt-tag-attttatgttatcaagttaagtttagcattgctcattcattgttgctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTT
                     | | ||| ||||  | || |  | | || |  |    |||  || |  ||    |  ||    ||| ||||| ||  |   | ||   || |       | ||  |   ||  | | | |||| ||||||||||||||||| | |   |||   ||||| | |||   | |  | ||||||||||||||||||| |||||||||| | || ||||||||| |
gtgagatttaataacaatcacacaccatgtttgtttcttattttat-atcaacttctcatttgatgacaatggttcttgtcacctagtattttctgggaaacaattggcttaaaggccattgatctaccttttattt-tgcagAATGGATTGATTTTCCAAGAGCTCCACAAGTACTTCCAAATGGTAAATTCATCCCAGGGAATAACAACAGTTATGATAAATGCCGTCGAAGATTTGACCT

upper sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 17
-gtaatcatatttgacttttgtcatgt--cattacttagagattc-aataatgatatgaccagttgttagattttatgttatcaagttaagtt-tagcattgctcattcattgttgctctcttc-----agAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTT
  || || | |     || |  |||||  ||| |   | || | | | | || || |     ||  ||  ||   |||    | | || |    | |      | ||   | ||| |  | | |     ||| ||||| ||||||||||| |||  ||||  |||||| | ||||    |  |||| ||||||||||| || |||||||||||| | |||||||||||| |
gttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCATTCCTGGGAATAACAATAGCTTTGATAAATGCCGCCGTAGATTTGACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562782|gb|BG551002.1|BG551002
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCT
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCT
EST: gi|22522391|gb|BU081202.1|BU081202
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
EST: gi|151398683|gb|EV268554.1|EV268554
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
EST: gi|18040842|gb|BM309136.1|BM309136
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
EST: gi|15662274|gb|BI699645.1|BI699645
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAG
EST: gi|20448926|gb|BQ253050.1|BQ253050
EST:     TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTG                         AGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCT
genomic: TGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatat ... ctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatgttatcaagttaagtttagcattgctcattcattgttgctctcttcagAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTT
                                       ttgttgctctcttc  CT-rich tract
                ttaagttta  TA-rich tract