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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatgctcaacaaattagagccttcatttcccttatttccttttacttgatgtacaatagaaattttctctcagAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT

Basic information

species Glycine max
transcript GLYMA03G29280.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126732|gb|BG791170.1|BG791170
EST:     GTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAG                         AAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCA
genomic: GTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGgtaaacatgc ... tttctctcagAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCA
EST: gi|8282536|gb|BE020027.1|BE020027
EST:     GTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAG                         AAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCA
genomic: GTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGgtaaacatgc ... tttctctcagAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttcatttcccttatttccttttacttgatgtacaatagaaattttctctcagAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT
                         acttgat  putative branch site (score: 5)
                                            ttttctctc  putative PPT
                                 tacaatagaaatttt  TA-rich tract