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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaaatataaaaatgctgtattttatattttgattaaattaaatttttactactatgttttctaacctgtgttgtgttcatggcttgtcctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCTCACCATTTTTGGCTCTCTCT

Basic information

species Glycine max
transcript GLYMA03G21610.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028891|gb|AW458674.1|AW458674
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|10252527|gb|BE820293.1|BE820293
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|6069946|gb|AW099526.1|AW099526
EST:     GGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGGCATTCAG                         TCCAGCTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: GGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|9900467|gb|BE609435.1|BE609435
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGCATATTATTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|38192122|gb|CF921328.1|CF921328
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|209723887|gb|BW675233.1|BW675233
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: gi|31471791|gb|CD413819.1|CD413819
EST:     CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG                         TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttactactatgttttctaacctgtgttgtgttcatggcttgtcctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCTCACCATTTTTGGCTCTCTCT
               ttctaac  putative branch site (score: 1)
                                       cttgtcctctttac  putative PPT
         tatgtttt  TA-rich tract