1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...caaaaatataaaaatgctgtattttatattttgattaaattaaatttttactactatgttttctaacctgtgttgtgttcatggcttgtcctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCTCACCATTTTTGGCTCTCTCT
species | Glycine max |
transcript | GLYMA03G21610.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTEST: gi|10252527|gb|BE820293.1|BE820293
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTEST: gi|6069946|gb|AW099526.1|AW099526
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: GGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGGCATTCAG TCCAGCTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTEST: gi|9900467|gb|BE609435.1|BE609435
genomic: GGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGCATATTATTTEST: gi|38192122|gb|CF921328.1|CF921328
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTEST: gi|209723887|gb|BW675233.1|BW675233
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTEST: gi|31471791|gb|CD413819.1|CD413819
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
EST: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG TCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
genomic: CAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGgtatgcatat ... ctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTT
ttttactactatgttttctaacctgtgttgtgttcatggcttgtcctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCTCACCATTTTTGGCTCTCTCT
ttctaac putative branch site (score: 1)
cttgtcctctttac putative PPT
tatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaatataaaaatgctgtattttatattttgattaaattaaatttttactactatgttttctaacctgtgttgtgttcatggcttgtcctctttacagTCCAGTTCAACATCCGCCAATTGGAGTTCCACAGTCTGTGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACCTCACCATTTTTGGCTCTCTCT
-aaaaata
- - - - - - - tgctgta
- - - - - - - - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggct