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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaacttgctctgctgtctgacccctctctctccactggcccctttattttctaatttattttgattttacgctgaacaaatatgctgcagcagctgcttactgttgcaaacaaaaatttgaatcctgtagACGAAAGCTATTCTATCCGATGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAAATGGGAATTGGGCGATACTGAGA

Basic information

species Glycine max
transcript GLYMA02G43490.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43490.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g00950.t01 (Vitis vinifera), 3'ss of exon 16
gtcaaacttgctctgctgtctgacccctctctctccactggcccctttattttctaatttattttgattttacgctgaacaaatatgctgc-agcagctgcttactgttgcaaacaaaaatttgaatcctgtagACGAAAGCTATTCTATCCGATGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAAATGGGAATTGGGCGATACTGAGA
                                                      |||  | | ||  |  | |     |||| | | |  | ||       || |  || | ||| | ||  || | | || ||| ||||| |  |||  | || ||  | |||| || ||||||||| | |||||||||||||| |||||||   ||||| ||||||||||  ||| ||||||
-----------------------------------------------------gtaaggtttctttgtact-cttcagacaactttaccactagtcatccttttccatttccaaccagaa--tgtaccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACCTTGCAGTCAGCCTGGAAACCGCAAAGTGGGAATTGGCTGATGCTGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaatatgctgcagcagctgcttactgttgcaaacaaaaatttgaatcctgtagACGAAAGCTATTCTATCCGATGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAAATGGGAATTGGGCGATACTGAGA
                   tgcttac  putative branch site (score: 2)
                                aaacaaaaatttgaat  TA-rich tract