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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactctccaaatgtgttttattctcgcactttctctatgttagtcttaaagtcaaaccctttgttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAG

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 17
gtaaggactctccaaatgtgttttattctcgcactttctctatgttagtcttaaagtcaaaccctttgttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAG
|| || ||  |     ||| ||   ||       ||| ||| ||   ||||    ||  ||          |||  ||| |    | ||||||||||||||||||||||||| ||||| ||||| || || ||| | ||||| ||||| || |||
gtcagtacctttttgttgttttggtttacttttttttttctttgcctgtct----gtttaattaac-----attatattgt----gatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 17
gtaaggactctccaaatgtgttttattctcgcactttctctatgttagtcttaaagtcaaaccctttgttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAG
|| || ||  |     ||| |||  ||  |    ||| ||| ||   ||||    ||  ||          |||  ||| |    | ||||||||||||||||||||||||| ||||| ||||| || || ||| | ||||| ||||| || |||
gtcagtacctttttgttgt-tttggtttactttttttttctttgcctgtct----gtttaattaac-----attatattgt----gatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 17
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaaggactctccaaatgtgttttattctcgcactttctctatgttagtcttaaagtcaaaccctttg-ttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAG
    |   |  |  ||||| || | |  |     |  |   ||    || ||    |    ||  |   ||  || | || | ||| |||||||||||| |||| ||||| || ||||||||||| ||||| ||  ||||||| ||||| || |||
----gtttttgctcaatgtcttctttaatattcttggcctaatagatgtatttttttttcccctctaacttcgtttccttttgctttgtgcagCATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctatgttagtcttaaagtcaaaccctttgttgattgcattattcttggtgcagCATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAG
                             tgttgat  putative branch site (score: 4)
                                        ttattctt  putative PPT
                                       attattctt  TA-rich tract