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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 17
gttctt-tgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
||   |    |||| || || ||  | ||| |  ||| || |  |  |   |  || |      || | |  ||   |||||||||||  | ||||| || || ||||| |||||||| |||||||| |||||||| || ||||||
gtcagtacctttttgttgttttggtttactttt-ttttttctttgcctgtctgtttaattaacattatattgtg---atgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 17
gttctt-tgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
||   |    |||| || || ||  | ||| |  ||| || |  |  |   |  || |      || | |  ||   |||||||||||  | ||||| || || ||||| |||||||| |||||||| |||||||| || ||||||
gtcagtacctttttgttgttttggtttacttt--ttttttctttgcctgtctgtttaattaacattatattgtg---atgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 15
gttctttgctttt--attcttatgactgactgtaatttcttgtcagaataatttcttgaacct-tcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
||   |  | |||  ||| || || ||||      | |  | |   |    | | || ||||  | | || | || || |||||||||||||| || |||||||| ||||| ||||||||||| ||||| |||||||| || || |||
gtcggtaacctttgcattgttttggctgatc----tcttctctttaatctctgtgttaaaccaatatcgtatttt-ctgatgcagCATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 5
---------------------gttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
                     | ||  | | |||    |  ||     |||  || ||   |  | ||   |  || |     |||   | ||| | ||||||||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| |||||||||
gttgtacttgcgagccctccaggtcagtacctttgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
---------------------gttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
                     | ||  | | ||     |  ||     |||  || ||   |  | ||   |  || |     |||   | ||| | ||||||||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| |||||||||
gttgtacttgcgagccctccaggtcagtaccttcgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 3
---------------------gttctttgcttttattcttatgactgactgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG-------------------------------------
                     | ||  | | ||     |  ||     |||  || ||   |  | ||   |  || |     |||   | ||| | ||||||||||| || || |||||||| |||||  ||| |||||| ||||| |||| ||| |||||||||                                     
gttgtacttgcgagccctccaggtcagtaccttcgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGTGTGCCATTGTAAATACCCATGTCATTGAACCACAGGTTTGTCGACTTCAGTTATTTTCAGATATCTTTTTTA

upper sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 17
-----gttctttgcttttattcttatgactgactgtaatttcttgtcag--aataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
      |  |||     |||     |||   ||| || ||    | |     ||  ||||||| |     |  |   |  ||||||||||||||| | |||||||| || |||||||||||||||||||| ||||||||||| || ||||||
gtataatggtttctcactatctgattgatgaactttatttcacagacctttgattgtttcttggattaaatgattcatctcttatgcagCATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttatgcagCATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAG
                 aataatttcttgaa  TA-rich tract