Sequence
atgc intronic sequence ATGC exonic sequencegtaagcccctaatcccagttgcttttcttttcaactgaaatactttcccccatcttcccgcccatttagtttccatctcttcttaaagtaaaagcaagtatagcttatggctatattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
Basic information
species | Glycine max |
transcript | GLYMA02G35240.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os10g33275.2 (Oryza sativa), 3'ss of exon 14
gtaagcccctaatcccagttgcttttcttttcaactgaaatactttcccccatcttcccgcccatttagtttccatctcttcttaaagtaaaagcaagtatagcttatggctatattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
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---------------------------------------------------------------atctcttttccccatttcaacacacttgaatcatatctactttcgtgttcca----gaacataagtttgcagtatgggttcttacttccatg-atataatttcagGCATATAATTATTATGGAAAGGATCTGGAGATGGTATGTGCTGTCCTATGTGCTGGGCTTTACCCAAATGTCGTTCAGTGCAAAAGACGAGGCAAGAGGA
upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 17
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 14
gtaagcccctaatcccagttgcttttcttttcaactgaaatactttcccccatcttcccgcccatttagtttccatctcttcttaaagtaaaagcaagtatagcttatggctatattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
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----------------------------------------------------------------gtaagcatcaggaacccgtcctaatactt-caattatattttcgaaccctgataaaatgtgaaactactg--atcattttcatttgcaaatggtg-cttttcagGCATACAACCAATATAGCTACGATATGGAGATGATAAGTGCGGTTCTATGTGCGGGGCTGTACCCAAATGTTGTCCAATGCAAAAGAAGAGGGAAGCGCA
upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 14
gtaagcccctaatcccagttgcttttcttttcaactgaaatactttcccccatcttcccgcccatttagtttccatctcttcttaaagtaaaagcaagtatagcttatggctatattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
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------------------------------------------------tctgtactaatattccctgagttattgcctctaaactgatttatatctaaaaaaag--gtggtttttttcc-----aggattagtagac-------------taatatatgtgcttgcagGCCTATAATCAATATAGCAATGATCTGGAGATGGTATGTGCAATCCTTTGTGCTGGGCTCTACCCAAATGTTTTGCAGTGCAAAAGAAGAGGAAAGCGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814331|gb|BI786606.1|BI786606EST: TCAATTTATTATCTGACATTGGATTTGTTGACAAGTCCAGGGGTGCTAAT GTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGT
genomic: TCAATTTATTATCTGACATTGGATTTGTTGACAAGTCCAGGGGTGCTAATgtaagcccct ... gtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
tgtcttt CT-rich tract
ataatttatgtcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcccctaatcccagttgcttttcttttcaactgaaatactttcccccatcttcccgcccatttagtttccatctcttcttaaagtaaaagcaagtatagcttatggctatattctgaataagtactaggagagtagttatgaagcataatttatgtctttgcagGTTTACAACCAGTATAGTCATGATTTGGAGATGGTTTGTGCAATTCTTTGTGCTGGGCTCTACCCTAATGTTGTTCAGTGCAAAAGAAGAGGAAAACGGA
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