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gtatgtactccttagttctttcctttcctattaacattctctgtgcagtgaagtttgaaatatactctttgttccttactttgttacactgaaaatgaaatgcatataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATT
species | Glycine max |
transcript | GLYMA02G25240.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGGAGGAGGATGACAAACAAGTAGAG ACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTEST: gi|7589291|gb|AW705068.1|AW705068
genomic: GAGGAGGAGGAGGATGACAAACAAGTAGAGgtatgtactc ... ataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTT
EST: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAG ACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTEST: gi|58018155|gb|CX704897.1|CX704897
genomic: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAGgtatgtactc ... ataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTT
EST: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAG ACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTEST: gi|254340269|gb|GR858394.1|GR858394
genomic: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAGgtatgtactc ... ataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTT
EST: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAG ACTAAGGGGGGAAAT
genomic: AAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAGgtatgtactc ... ataattgcagACTAAGGGGGGAAAT
tatactctttgttccttactttgttacactgaaaatgaaatgcatataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATT
tccttac putative branch site (score: 2)
aaatgcatataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactccttagttctttcctttcctattaacattctctgtgcagtgaagtttgaaatatactctttgttccttactttgttacactgaaaatgaaatgcatataattgcagACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG