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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacataacaaatacacttctattttgattttgtgactattttgtaacaatctaatgagatataatttctctagGTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGAATCAACCCATGTCAAATGACCTCACAGATTATATTATAGCTCTTTCAAA

Basic information

species Glycine max
transcript GLYMA02G15070.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997225|gb|CF808814.1|CF808814
EST:     CTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAG                         GTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGA
genomic: CTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAGgtatttacat ... atttctctagGTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGA
EST: gi|6200887|gb|AW152987.1|AW152987
EST:     CTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAG                         GTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGA
genomic: CTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAGgtatttacat ... atttctctagGTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttgattttgtgactattttgtaacaatctaatgagatataatttctctagGTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGAATCAACCCATGTCAAATGACCTCACAGATTATATTATAGCTCTTTCAAA
                                              tttctct  CT-rich tract
                                 taatgagatataattt  TA-rich tract