1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttagcctctagttagttacgagcgtgaatttctgtgttatcgctttgcgttcaaatctaattttctagtactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACCTGATTTGGGAGATAATTTATTTTCTGTATGTGATGGTGTTTGTCTCCG
species | Glycine max |
transcript | GLYMA01G43470.5 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|193669681|gb|FK607759.1|FK607759
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCCTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|208317694|gb|GE116265.1|GE116265
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACEST: gi|193424751|gb|FK392042.1|FK392042
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
EST: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAG AATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
genomic: TCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGgtacaagttg ... ttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGAC
tgcgttcaaatctaattttctagtactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACCTGATTTGGGAGATAATTTATTTTCTGTATGTGATGGTGTTTGTCTCCG
tactgac putative branch site (score: 1)
tttttatttt putative PPT
aaatctaattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcctctagttagttacgagcgtgaatttctgtgttatcgctttgcgttcaaatctaattttctagtactgactgcagcatttttattttgtgcacagAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGAGACCTGATTTGGGAGATAATTTATTTTCTGTATGTGATGGTGTTTGTCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT