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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattaatatgctggcttattcagcataaccagtgattagtatactcaaatatattttcaaatgcagacattttgatttgcatgtctattggtcatacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 15
gtaagattaatatgctg-gcttattcagca--taaccagtgattagtatactcaaatatattttcaaatgcagacattttgattt------------gcatgtctattggtca---tacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG
||||||   || ||| | ||||| ||   |  | |  ||    || ||   | | ||| |  ||   || || |  || || |||            | |  ||| ||  |||   | ||||||||||||||  | ||||||||||||||||| |||||||||||  | || || |||
gtaagag-gatctgcagtgcttactctaaaattgaaaagaatgtattaattttagata-agctttggattcacattttatgtttttagtattagtgaggaaatctcttaatcaacttgcagGGAAGGGAGATTTTGCAGAGTACTGTTGATCTCGTTCAGAATAATCTAAACTTGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207797588|gb|GD769412.1|GD769412
EST:     CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAA                         GGAAGGGAGATACTACAGAGTACTG
genomic: CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAAgtaagattaa ... ggtcatacagGGAAGGGAGATACTACAGAGTACTG
EST: gi|151395403|gb|EV265280.1|EV265280
EST:     CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAA                         GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT
genomic: CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAAgtaagattaa ... ggtcatacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT
EST: gi|193488012|gb|FK453161.1|FK453161
EST:     CCATTAGCNGAGCTTATAACTTCACAA                         GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT
genomic: CCATTAGCTGAGCTTATAACTTCACAAgtaagattaa ... ggtcatacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT
EST: gi|208161268|gb|GD963442.1|GD963442
EST:     CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAA                         GGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT
genomic: CGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAAgtaagattaa ... ggtcatacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaatatattttcaaatgcagacattttgatttgcatgtctattggtcatacagGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAG
                         ttttgat  putative branch site (score: 4)
     tatattttcaaat  TA-rich tract