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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttgcttcttaagttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 17
gttctttgcttcttaa-gttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
||   |  ||| ||   ||| || |   | | |  |  |   |||   |  | |||  | |||  | | |   | |  |||||||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||
gtcagtacctttttgttgttttggtt-tacttttttttttctttgcctgtctgtttaattaacattatat---tgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 17
gttctttgcttcttaagttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtat-attgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
||   |  ||| ||  ||| |  ||   || || |  | | || || |  | | | || ||       | |||  |  |||||||||| || || || || || ||||| |||||||| |||||||| ||||||||||||||||||
gtcagtaccttttt--gttgttttg---gtttactttttttttctttgcctgtctgtttaattaacattatattgtgatgcagCATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAG

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 15
gttctttgcttcttaagttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatatt---gtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
  ||  |     ||   || |  || |    | ||    |||  |||   | | | || ||||      |||| ||    ||||||||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||
-gtcggtaacctttgcattgttttggc----tgatctcttctctttaatctctgtgttaaaccaatatcgtattttctgatgcagCATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 5
-------------gttctttgcttcttaagttctg--atgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgt---gcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
             |  ||     ||   |  | ||   ||           |||||   || | ||   | || |||      |  || ||||   |||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
gttgtacttgcgagccctccaggtcagtacctttgcattggtgcagctgatatctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
-------------gttctttgcttct-taagttctgatgacagta--taatgatctcttgttagaatatttcttgaaccgtgtctgtatattgt---gcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
             |  ||     ||  ||  |||  ||    | |  | || |||||   || | ||   | || |||      |  || ||||   |||||||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||
gttgtacttgcgagccctccaggtcagtaccttcgcattggtgcagctgat-atctccgcttcgtattcctgtttaactaaccttacattttgtaatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 17
--------gttctttgcttcttaagttctgatgacagtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
        |||  |  ||   | | |  |||      | | |    |  ||| | |  | ||   | ||  |  |   | | || |||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||
gtataatggtttctcactatctgattgatgaactttatttcacagacctttgattgtttcttggattaaatg-attcatctcttatgcagCATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtataatgatctcttgttagaatatttcttgaaccgtgtctgtatattgtgcagCATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAG
              ttgttagaatattt  TA-rich tract