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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgttgggttcctctaaataaatttcattttcattctcttaacttcatcattattgagtttaaaattctcttactttgctggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTTCTTAAGTCAAGTTGACAG

Basic information

species Glycine max
transcript GLYMA01G24530.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314111|gb|GR831740.1|GR831740
EST:     AGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAG                         TGCTCATACTGAATGCA-TGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
genomic: AGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAGgcatgttggg ... ggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
EST: gi|151398324|gb|EV268195.1|EV268195
EST:     CATTGACCACATAAATCAACATGGAAG                         TGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
genomic: CATTGACCACATAAATCAACATGGAAGgcatgttggg ... ggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
EST: gi|6724716|gb|AW309049.1|AW309049
EST:     ATTGTAGAAGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAG                         TGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
genomic: ATTGTAGAAGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAGgcatgttggg ... ggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT
EST: gi|11117946|gb|BF219539.1|BF219539
EST:     ATTGTAGAAGATGTATTTGCTGCCATNGNNCACATAAATCAACATNNNAG                         TGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTN
genomic: ATTGTAGAAGATGTATTTGCTGCCATTGACCACATAAATCAACATGGAAGgcatgttggg ... ggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttaacttcatcattattgagtttaaaattctcttactttgctggttatgcagTGCTCATACTGAATGCATTGTTACAGAAGATAGTGAAGTTGCTGAGACTTTCTTAAGTCAAGTTGACAG
           atcattattgagttta  TA-rich tract