1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...cgaaataattagatactttgttaatgcattctgcgcagaataaaaatgatgtccagattgtatttattatgttctcattcctttcgtaataatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG
species | Glycine max |
transcript | GLYMA01G00430.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|11689289|gb|BF596965.1|BF596965
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|42723073|gb|CK768972.1|CK768972
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|8827016|gb|BE210746.1|BE210746
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: TGTGGTCAACACTGGGTGGGCTATGGTTG-CTCTCATCGATGCTGGACAA GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|51344264|gb|CO984997.1|CO984997
genomic: TGTGGTCAACACTGGGTGGGCTATG-TTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|193710694|gb|FK644652.1|FK644652
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: TGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|193391350|gb|FK355031.1|FK355031
genomic: TGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAAEST: gi|10253317|gb|BE821083.1|BE821083
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAA-
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATEST: gi|7326817|gb|AW620615.1|AW620615
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
EST: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAG GCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
genomic: ATGTGGTCAACACTGGGTGGGCTATGTTGGCTCTCATTGATGCTGGACAGgtatgacaaa ... aatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAAT
atgatgtccagattgtatttattatgttctcattcctttcgtaataatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG
attgtatttattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaaataattagatactttgttaatgcattctgcgcagaataaaaatgatgtccagattgtatttattatgttctcattcctttcgtaataatgaaacagGCTAAGAGAGATTCGCAACCACTGCACCGGGCAGCTGCATACTTGATAAATTCCCAATTGGAGGACGGTGACTTTCCGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA