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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttgatcccttctagtcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttgggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC

Basic information

species Glycine max
transcript GLYMA20G25800.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 3'ss of exon 7
---------------gttggttgatcccttctagtcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttg-ggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC
                |    | |||| || ||   |||    ||| |  | |||||   |  ||| |         |  | ||     ||  |   |||  ||||      | |  | ||||||||  | || || ||| | || |||||||| || || ||||||||||| |||||||| ||||||||||||||  | ||| |
gtatcagatccatccttcaaatcatccgtt-tatcactgctttatt-gaatcatcttgagcatttgtagcatgtgctaactatacccacggattggcattaccagGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCTGATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTC

upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G373175_T02 (Zea mays), 3'ss of exon 13
----------------------------gttggttgatcccttctagtcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttgggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC
                             ||   | |   || ||   |   | |  | ||   || |||||     |    || |||  |    || |   || |   |||  ||||      | || | ||||||||  | ||||| ||  | || |||||||| || || || |||||||| ||||| |||||||||||||||||  | ||| |
gtacctgattcacccataagattaaatttttacataacagctgctttactccgcatctctg---tagcttttgtagcttgtgtgctgataatgcttact---gcttgtcattttcagGAAAGCACTTGTCTATGCTTCCAGTTGAACCTAAGTTAGGAAAGATGCTTATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTC

upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 13
--------------------gttggttgatcccttctagtcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttgggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC
                    |||   | || | |||| || ||   || |   ||  || | |  || ||  | |  | | | | | ||  |         |||| |||| |||  | ||||||||||||| ||||| || |||||||| |||||||| ||| | || ||| | ||||||||||| ||||| ||| ||||  | |||||
gtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgca-atgtataactttttcattcctcatgtcctctaactaac------attggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatcttttcctcttgaaatgatgaagacttgtatttgggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC
                                         ccttc  CT-rich tract
                              ttgtattt  TA-rich tract