1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tatgtccaagaacaagaacatgcacactggttttgcattaatactgatatatcagggtggaagtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG
species | Glycine max |
transcript | GLYMA20G25120.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGCAAGAEST: gi|151409608|gb|EV279416.1|EV279416
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAEST: gi|5753691|gb|AI960978.1|AI960978
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
gatatatcagggtggaagtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG
tactgat putative branch site (score: 2)
ttttcttcctcttgct putative PPT
attattatttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtccaagaacaagaacatgcacactggttttgcattaatactgatatatcagggtggaagtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG
- - -ccaagaa
- - - - - - - - - catgcac
- - - - - - - - - - - - -actggtt
- - - - - - - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgga