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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtccaagaacaagaacatgcacactggttttgcattaatactgatatatcagggtggaagtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389687|gb|CA852894.1|CA852894
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGCAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|5753691|gb|AI960978.1|AI960978
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatc ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatatcagggtggaagtgcattattatttacaattttcttcctcttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCACCTCGTGCAATGGTTGTCCTACATCCACTCAAG
 tactgat  putative branch site (score: 2)
                                   ttttcttcctcttgct  putative PPT
                     attattatttacaatt  TA-rich tract