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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccgcaggtggtctagctaatctcttgctgtttaattcatattcaaggaatttgagagtagtctatttgttcgtgtgactttttatgtgtctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAGTATATATCAATTGTGCAAATTCTCAGGCGTGCTATTTATGTTTTTGTGG

Basic information

species Glycine max
transcript GLYMA19G37310.4
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995513|gb|CF807102.1|CF807102
EST:     TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAAGTG                         GCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGC
genomic: TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGgtcagtattc ... ctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGC
EST: gi|19052879|gb|BM731546.1|BM731546
EST:     TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTG                         GCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG
genomic: TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGgtcagtattc ... ctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG
EST: gi|151407290|gb|EV277105.1|EV277105
EST:     TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGG--                         -CACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG
genomic: TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGgtcagtattc ... ctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG
EST: gi|207688927|gb|GD672272.1|GD672272
EST:     TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTG                         GCACATACCATTGTTTTAG
genomic: TGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGgtcagtattc ... ctgttttcagGCACATACCATTGTTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaatttgagagtagtctatttgttcgtgtgactttttatgtgtctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAGTATATATCAATTGTGCAAATTCTCAGGCGTGCTATTTATGTTTTTGTGG
                                            tctgttttc  CT-rich tract
                                actttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccgcaggtggtctagctaatctcttgctgtttaattcatattcaaggaatttgagagtagtctatttgttcgtgtgactttttatgtgtctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAGTATATATCAATTGTGCAAATTCTCAGGCGTGCTATTTATGTTTTTGTGG

- -gcaggtg
- - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgtgtg