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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccgcaggtggtctagctaatctcttgctgtttaattcatattcaaggaatttgagagtagtctatttgttcgtgtgactttttatgtgtctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAGTATATATCAATTGTGCAAATTCTCAGGCGTGCTATTTATGTTTTTGTGG

Basic information

species Glycine max
transcript GLYMA19G37310.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995513|gb|CF807102.1|CF807102
EST:     GAACTTTCTTGATCTGCTTCAAGT
genomic: GAACTTTCTTGATCTGCTTCA-G-
EST: gi|37995513|gb|CF807102.1|CF807102
EST:     GAACTTTCTTGATCTGCTTCAAGT
genomic: GAACTTTCTTGATCTGCTTCA-G-
EST: gi|207688927|gb|GD672272.1|GD672272
EST:     ATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAG                         GTGGCACATACCATTGTTTTAG
genomic: ATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGgtggtcagta ... ctgttttcagG---CACATACCATTGTTTTAG
EST: gi|151407290|gb|EV277105.1|EV277105
EST:     ATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAG                         GCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG
genomic: ATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGgtggtcagta ... ctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaatttgagagtagtctatttgttcgtgtgactttttatgtgtctgttttcagGCACATACCATTGTTTTAGTGAGCCTGGTGATCATATCCCAAAGAGGCTAGTATATATCAATTGTGCAAATTCTCAGGCGTGCTATTTATGTTTTTGTGG
                                            tctgttttc  CT-rich tract
                                actttttat  TA-rich tract