Sequence
atgc intronic sequence ATGC exonic sequence...atggatggctattttgtattaatgtgcaaactgcagccgtagatgcaaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
Basic information
species | Glycine max |
transcript | GLYMA19G34580.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 3'ss of exon 16
----atggatggctattttgtattaatgtgcaaactgcagccgtagatgcaaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattt-tagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
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ctttttttgtaattgtactggagatctacttaacgtccctaagtaactctttccttcctaccatttgaatgattccatgattgcaaaa-----cttaatttatagGTTCAAGGTTGACCAATTATGTTGGAATACTTAGTCAAGGACTAAGAATAGCACCTCCTGAGGCTCCCGTGACAGGCTATATG
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM5G831712_T02 (Zea mays), 3'ss of exon 16
-atggatggctattttgtat-taatgtgca-aactgcagccgtagatgcaaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
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aaaatatagtttgcatgtgtatagttcatttggtagcatttaaggtcttgaacatttcttca--taagttattcccttctcacggtaaaactcgat-ttgtagGTTCAAGGTTGACGAATTTTGTGGGAATTCTTAGTCAAGGGCTAAGAATTGCACCTCCTGAGGCACCTGTTACTGGCTATATG
upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 16
----atggatggctattttgtattaatgtgcaaactgcagccgtagatgcaaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
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tttttctgagttctatttcttttcaaaaataaaataaaag--aaaaaaggaactgaaattaaaatgaaactaaaa--tgaagctgaagattttgtcctcaacagGTTCCCGGTTGACAAACTTTGTGGGTATACTTAGTCAAGGACTGAGAATAGCTCCTCCTGAAGCTCCAGCAACTGGCTATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398054|gb|EV267932.1|EV267932EST: GTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGTATG GTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTG
genomic: GTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGgtaggttgta ... tctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
ttctctatttt CT-rich tract
tacaaaattgaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggatggctattttgtattaatgtgcaaactgcagccgtagatgcaaatatgtacaaaattgaattagacacctatgacaaaaatgttctctattttagGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-tggatgg
- - - - - - - - - - - - tgcaaac
- - - - - - - - - - - - - - - -tgcagcc
- - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa