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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatttggtttatttgtgcatgtgctttatacgttgcatacagttgtggcccagcttgtaaactaattaactaatgtcatttatcattatgttcttttcattataaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTCTTCTCCCTTCCTATTCAGTGATATCATTGGATTTTTTAATATGATTAG

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308408|gb|FK002808.1|FK002808
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|6724458|gb|AW308857.1|AW308857
EST:     TTACATCAGCCAACGTGATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|6665820|gb|AW277337.1|AW277337
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|193567106|gb|FK526901.1|FK526901
EST:     TTACATCAACCAACGTAATGGATGAAAATTTATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|193547063|gb|FK504066.1|FK504066
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCT
EST: gi|208274674|gb|GE069678.1|GE069678
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACC
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACC
EST: gi|214007886|gb|DB986461.1|DB986461
EST:     TTACATCAACCAACGTAATAGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|208206462|gb|GE007909.1|GE007909
EST:     TTACATCAACCAACGTTATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATT
EST: gi|58024810|gb|CX711551.1|CX711551
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|193337776|gb|FK302101.1|FK302101
EST:     ATGAAAATTCATTTCTTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: ATGAAAATTCA-TTC-TTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|192308407|gb|FK002807.1|FK002807
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|208142892|gb|GD942386.1|GD942386
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|208200211|gb|GE001279.1|GE001279
EST:     AATGGATGAAAATTCATTTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: AATGGATGAAAATTCA-TTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|298173738|gb|HO017074.1|HO017074
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|208255773|gb|GE052752.1|GE052752
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|207826228|gb|GD799059.1|GD799059
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|58020822|gb|CX707564.1|CX707564
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|207696409|gb|GD678198.1|GD678198
EST:     ATGGATGAAAATTTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: ATGGATGAAAA-TTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|207769375|gb|GD742039.1|GD742039
EST:     TTACATCAACCAACGTAATGGATGAGAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCA
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCA
EST: gi|6070570|gb|AW099957.1|AW099957
EST:     TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: TTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
EST: gi|193391341|gb|FK356016.1|FK356016
EST:     GAGCCGAAGAAG                         GTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT
genomic: GAGCCGAAGAAGgtacaatttg ... aaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactaattaactaatgtcatttatcattatgttcttttcattataaaaatacagGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTCTTCTCCCTTCCTATTCAGTGATATCATTGGATTTTTTAATATGATTAG
         aactaat  putative branch site (score: 2)
                 tcatttatcattatgt  TA-rich tract