1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ggtaaagaatccccattattatatctttgcattagacccattattattactattattattgtttgacaagtattgctgatattctcttctactaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAG
species | Glycine max |
transcript | GLYMA18G51810.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAG GCTTAAGCACGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCEST: gi|6914420|gb|AW395950.1|AW395950
genomic: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGggtaaagaat ... ctaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTC
EST: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAG GCTTAAGCACGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCEST: gi|21888134|gb|BQ741347.1|BQ741347
genomic: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGggtaaagaat ... ctaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTC
EST: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAG GCTTAAGCAAGTCTGATAAAEST: gi|6747041|gb|AW317497.1|AW317497
genomic: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGggtaaagaat ... ctaatttgaaGCTTAAGCAAGTCTGATAAA
EST: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAG GCTTAAGCACGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTC
genomic: GGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGggtaaagaat ... ctaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTC
ttactattattattgtttgacaagtattgctgatattctcttctactaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAG
tactaat putative branch site (score: 1)
tattctcttctact CT-rich tract
attattattgtttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaaagaatccccattattatatctttgcattagacccattattattactattattattgtttgacaagtattgctgatattctcttctactaatttgaaGCTTAAGCAAGTCTGATAAACCAATGATGTTCTTCATCACCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG