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...tttttaatacattgccactcagtagtaaataacttcccctatgatgagatgccactcagtaccttttaaataaattactaacatgctgtcatcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTG
species | Glycine max |
transcript | GLYMA18G46340.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG CCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTEST: gi|254318100|gb|GR832268.1|GR832268
genomic: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGgtatatatat ... atcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTT
EST: TCATGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG CCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCEST: gi|6073170|gb|AW102557.1|AW102557
genomic: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGgtatatatat ... atcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCC
EST: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG CCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCEST: gi|254315925|gb|GR825734.1|GR825734
genomic: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGgtatatatat ... atcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCC
EST: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG CCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCC
genomic: TCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATGgtatatatat ... atcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCC
gagatgccactcagtaccttttaaataaattactaacatgctgtcatcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTG
tactaac putative branch site (score: 0)
tcatcctctc putative PPT
ttttaaataaattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaatacattgccactcagtagtaaataacttcccctatgatgagatgccactcagtaccttttaaataaattactaacatgctgtcatcctctcagCCTTGCTTCATACATGACAGAAGATGATGTCCGGAAAGGAATCTTGTATCCATCCATTGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -cattgcc
- - - - - - tgccact
- - - - - - - - - - - - - - - - cttcccc
- - - - - - - - - - - - - - - - - - - - -tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct