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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaaactgtaattgggggtttacttattgagacttgagattgatatgtcagaatgaacaactctttcttttttgccttcttgaatcatattttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGA

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411598|gb|EV281409.1|EV281409
EST:     CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAG                         GTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT
genomic: CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGggtatctttc ... ttttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT
EST: gi|192309075|gb|FG999372.1|FG999372
EST:     CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAG                         GTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT
genomic: CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGggtatctttc ... ttttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT
EST: gi|9564171|gb|BE473680.1|BE473680
EST:     CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAG                         GTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT
genomic: CCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGggtatctttc ... ttttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcagaatgaacaactctttcttttttgccttcttgaatcatattttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGA
                                             ttttgct  CT-rich tract
                                   ttgaatcatatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgaaactgtaattgggggtttacttattgagacttgagattgatatgtcagaatgaacaactctttcttttttgccttcttgaatcatattttgctgcaGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - gggggtt
- - - - - - - - - - - - - - - - - - - - -tgatatg