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gtaaaggtaatttttagtttaaatatattattttcagtgtaatattatttctgaaaagtgcttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG
species | Glycine max |
transcript | GLYMA17G14450.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGEST: gi|254340092|gb|GR858217.1|GR858217
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGEST: gi|208217969|gb|GE018283.1|GE018283
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGEST: gi|308098914|gb|HO760755.1|HO760755
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
EST: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAG AAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
genomic: CCAAAACGACTTCGACGAGTTCTTTTGCTCTTAAATTTGATATGCACAAGgtaaaggtaa ... aaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAG
atatattattttcagtgtaatattatttctgaaaagtgcttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG
cttcttta CT-rich tract
ttattttcagtgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggtaatttttagtttaaatatattattttcagtgtaatattatttctgaaaagtgcttctttaaattgtcagAAAAAGCGTGCAGCAAGGAAAGATCGATCTGGTGAAGAGGATACATGGCAGTTATCACGTTTTTATCCCATAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT