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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacatgccatatggtctacaaattcaaatcattgttgatgcttggttacaaaatgcagatggttgtatctaattatggcgttatttcattgtttaacagGAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGAAGGTTTGATACTGACATTGGACTGCCAAA

Basic information

species Glycine max
transcript GLYMA17G13080.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041385|gb|BM309679.1|BM309679
EST:     GGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAG                         GAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGA
genomic: GGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcaaag ... tgtttaacagGAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacaaaatgcagatggttgtatctaattatggcgttatttcattgtttaacagGAAACTGATTTTTCTGGTCTACTCCATCTGATGAAATTTTACAAGAGTCGAAGGTTTGATACTGACATTGGACTGCCAAA
                      atctaat  putative branch site (score: 3)
                                       tttcatt  putative PPT
                                    ttatttcattgtttaa  TA-rich tract