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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA

Basic information

species Glycine max
transcript GLYMA17G07050.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os08g14570.1 (Oryza sativa), 3'ss of exon 15
---------gtactt---attctcggatacaatttattaattatcaatcaatgc----ggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
          |||||   ||| ||  | |   ||  | |  |   |||  |||     | |  || ||      ||   |      |||   | |||||||| ||||| |||  |||||| || || || | ||||||||| || |||||||||||||| ||||||||||| ||||||||  | |  || ||||| |
gtaattgaactacttgacattttcatacatgtttgttgatctgcaaattcatgtttttgttcagcgttgctcatatttcctacctttgtctgtccagGCTTCCGAAATCTGGGACATGATCTCCCAGGGTGGTTACATTTACGTCTGTGGTGATGCCAAAGGCATGGCCAGAGATGTACATAGAGTTCTCCACACCA

upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G144407_T01 (Zea mays), 3'ss of exon 16
---------gtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
          | ||  || || ||| ||| ||  |  |   |    ||  | ||    |    ||    |    |||||| |   | ||||| || ||||| |||  |||||| || ||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||  | |  || ||||| |
gtaacacagctgctcgttttctgat-caactt-ctgctgccctccaaacccagtggctcactgctcttgcctttgttcattt-tttccagGCATCTGAAATCTGGGACATGATCTCCCAAGGTGCTTACATCTATGTCTGTGGTGATGCCAAAGGCATGGCCAGAGATGTACATAGAGTTCTCCACACCA

upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 16
lower sequence: AC217947.4_FGT002 (Zea mays), 3'ss of exon 15
---------gtacttattctcggatacaatt-tattaattatcaatcaatg-cggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
          | || ||  |  || | | || | |||     ||| |  |  |    || || |   |  |   |  ||  |     | ||||| || ||||| |||  |||||| || ||||| |||||||| ||||| |||||||| ||||| ||||||||||| || |||||  | |  || || || |
gtaatcaagctgctcatcttgtgacaaacttctgttaccctccaacccgtaacccagtggctcacagttcttgcc--tttgtccatttccagGCATCTGAAATCTGGGACATGATCTCCCAAGGTGCTTACATCTATGTCTGTGGTGACGCCAAAGGCATGGCCAGAGACGTACATAGAGTTCTCCATACCA

upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 16
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 15
gtacttattctcggatac--aatttattaattatca-atcaatgcggtatgccttatcttaatcaacggttcatgtgcc-tgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
|||     |    || ||  ||       ||  ||| ||  || |    |    |   | |    ||  |   | |||  |||||||||| || || ||||  ||||| || |||||||||||  | ||||| |||||||| ||||| |||||||| || ||||| ||| |  | || |||||||
gtatgagcttatagaaacccaaaactcagatcttcatatagattcaaattcagattcttgagctgacaatctttctgcaatgcagGCTTCTGATATCTGGAATATGATCTCTCAAGGAGCTTATTTATATGTTTGTGGTGACGCCAAAGGCATGGCAAGAGATGTTCACAGATCTCTCCACACAA

upper sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 3'ss of exon 16
----------------------------------------gtacttattctcgg-ataca---atttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
                                        ||  || || | |  ||| |   || |||  |||||    || |   || ||   |  || | |  | | ||  | |   |  |||| || || |||||||   | || || || ||||  ||||||||||| |||||||||||||| |||||||| |||||||| ||| |  | || || || |
gtacgggactctcatttctcagaagggccattcatctgaagtttttgtttttgatatatatatatatatgtattattgtccatt--tgtttgagatg-ctaagtgcatgtttgctttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTGGTGATGCCAAAGGCATGGCAAGGGATGTCCACAGAACTCTTCATACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208267686|gb|GE066791.1|GE066791
EST:     CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGA-AAG                         GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACACTTATGTGTGT
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: gi|254332042|gb|GR846245.1|GR846245
EST:     CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG                         GCTTCAGAA-TTTGGAGCATGATATCACA-GGAGCTTACATTTA
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTA
EST: gi|120534217|gb|EH262350.1|EH262350
EST:     CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG                         GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: gi|105633674|gb|DW247037.1|DW247037
EST:     ACAACATAAAATGATGGAGAAG                         GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
genomic: ACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: gi|10710524|gb|BF010242.1|BF010242
EST:     CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG                         GCTTCAGACATNTGGAGCATGATATCACAACGAGCTTACATTTATGTGTGT
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTGGTGATGCCAAGGGCATGGCCAGGGATGTACACCGCGCCCTGCACACAA
                        ttatcttaat  TA-rich tract