1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tgccattatgaatttaattacctttttattgattcaacacattttggcaatgaacaacaataccaaagaagtttttctttgtgactgcactcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCCTG
species | Glycine max |
transcript | GLYMA17G05390.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCG GAATAACATTCCGTTTGTTCGACTTGACGGGACTTTGAAEST: gi|193674305|gb|FK616445.1|FK616445
genomic: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgtaagatttg ... tcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAA
EST: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCG GAATAACATTTCGTTTGTTCCGACTTGACGGGACTTTGAATCTCGCAGCAGEST: gi|208062975|gb|GD860877.1|GD860877
genomic: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgtaagatttg ... tcatgtacagGAATAACATTTCGTTTGTTC-GACTTGACGGGACTTTGAATCT-GCAGCAG
EST: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCG GAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGEST: gi|193730948|gb|FK663178.1|FK663178
genomic: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgtaagatttg ... tcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCG
EST: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCG GAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGEST: gi|208229625|gb|GE026466.1|GE026466
genomic: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgtaagatttg ... tcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCG
EST: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATCCCCTTTACTCG GAATAACATTTCG
genomic: TTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGgtaagatttg ... tcatgtacagGAATAACATTTCG
ggcaatgaacaacaataccaaagaagtttttctttgtgactgcactcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCCTG
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccattatgaatttaattacctttttattgattcaacacattttggcaatgaacaacaataccaaagaagtttttctttgtgactgcactcatgtacagGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
tgccatt
- - - - - - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgca