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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtttcagtattcagttgtaattagcagttggaaattgatgtataggattctgtgttcttataactcttttcaaaacttcttccagGAATAAAAATGAGGGCTATTTCGTTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGGGTAGGCCTTGAGACAATATTCAAGTCCCCTGCCCTGCTA

Basic information

species Glycine max
transcript GLYMA17G01810.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01810.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv00s1404g00010.t01 (Vitis vinifera), 3'ss of exon 5
gttgtttcagtattcagttgtaattagcagttggaaattgatgtataggattctgtgttcttataactcttttcaaaact-tcttccagGAATAAAAATGAGGGCTATTTCGTTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGGGTAGGCCTTGAGACAATATTCAAGTCCCCTGCCCTGCTA
||    |||  |||  | |     |  |      || |  |||| |   |||   | ||||||  | | || ||||   | |||| |||||| ||  | ||||| |||||| |||||||||| ||| |||||||||||||||||| || |  |||  ||||  |  ||   || |  ||||| ||  | 
gtgtgctcatcatttggatc---atgactccaaaaattctatgttttttatttcct-ttcttaacatttttatcaatcttctctttcagGAACAAGGAAGAGGGATATTTCCTTGCTTCTGAGCTTCTGAAGAAGATATGTTCAAATCAGAAAGGTGTTGAAGCTTTAAGAAACTTGCCTGCTCTTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattgatgtataggattctgtgttcttataactcttttcaaaacttcttccagGAATAAAAATGAGGGCTATTTCGTTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGGGTAGGCCTTGAGACAATATTCAAGTCCCCTGCCCTGCTA
                           ttataac  putative branch site (score: 2)
                                             cttcttcc  putative PPT
                        ttcttataa  TA-rich tract