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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcggatgattgtaaaagaattcttttttatgtttttatcatatatataatctatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG

Basic information

species Glycine max
transcript GLYMA17G00570.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 16
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 16
---------------------------------------------------------------------------------------------------------gttagtcggatgattgtaaaag--aattcttttttatgtttttatcatat-atataatctatat------ataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
                                                                                                          ||| |   |  |||| |||||   |||  |   | ||| ||| | || |  | | || || ||      ||| |  ||  | ||  |||||||| ||||||||||||||| |||||||||| ||  |  | ||||| ||||| || || || |  ||||| |||||| |||||||||||||||||||||
gtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG

upper sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 17
gttagtcggatgattgtaaaagaattcttttttatgtttttatcatatatataatctatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
|||||  | ||   | | || |   | ||| ||| |  ||| |  ||||| |      |||  |||  ||||    |||||||||| |||||||||||||| || |||||||||||  | || ||||| ||||| ||  | || |  |||||||||||||||||||||||||| |||||||
gttagcagaatttatttgaagg---tttttcttaggcatttttactatatct------tatggaactctttt----tccagGAGGTCAAGGAGTGTGCTATTTCTTGCATGGGCCTTCTCGTTTCAACATTTGGTGATAACCTCAGAGCAGAATTACCTGCATGCCTTCCTGTACTTGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttatgtttttatcatatatataatctatatataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
                                 atataac  putative branch site (score: 3)
                                    taacctttttcctctc  CT-rich tract
     ttatgtttttatcata  TA-rich tract