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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatctcccgtatttagacttgtttcatttttttttagtaaatttcttcccaacttattaatgtgatgaaaaagttttgttggatttccagAAATCTTTCTGCAAACAACTTCAAAGGGAGTATACCTGTTGAGTTGGGCCATATAATAAATCTTGACACGCT

Basic information

species Glycine max
transcript GLYMA16G32830.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 15
gtatgtttcatctcccg--tatttagacttgtttcatttttttttagtaaatttcttcccaac-ttattaatgtga---------------tgaaaaag-----ttttgttggatttccagAAATCTTTCTGCAAACAACTTCAAAGGGAGTATACCTGTTGAGTTGGGCCATATAATAAATCTTGACACGCT
||| ||||  |     |  | |||    |  | | | ||  |||||  |  ||  | |||||  | |   ||   |               ||||| ||     |||||||||| | |||||||||||||  ||||||| |||||||| || |||||  ||||| |||| |  ||  | |||||||| ||  |
gtaagttttgtgctgtgagtttttgagttcttgttacttcattttaa-actttgatgcccaatgtcacagatacaactgccctatttgttctgaaagagcttatttttgttggactgccagAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaaatttcttcccaacttattaatgtgatgaaaaagttttgttggatttccagAAATCTTTCTGCAAACAACTTCAAAGGGAGTATACCTGTTGAGTTGGGCCATATAATAAATCTTGACACGCT
                   tattaat  putative branch site (score: 2)
                                                tttcc  putative PPT
               aacttattaat  TA-rich tract