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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctatatctgccttatcttattctaatgcttagaacatagattaaaaaaagtgtcttttttcttacttttgatttgtttggactgtttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT

Basic information

species Glycine max
transcript GLYMA16G19580.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302190|gb|FG996612.1|FG996612
EST:     TGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAG                         GGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
genomic: TGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAGgtgtctatat ... tttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
EST: gi|58014702|gb|CX701444.1|CX701444
EST:     ATACATCATATTTATGCNTGAG                         GGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
genomic: ATACATCATATTTATGCCTGAGgtgtctatat ... tttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
EST: gi|208236326|gb|GE032514.1|GE032514
EST:     CTGAATTTGAGCCCCATACCAAAAGTCCATACATCATATTTATGCCTGAG                         GGATCAAAAACACATATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
genomic: CTGAATTTGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAGgtgtctatat ... tttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
EST: gi|22523089|gb|BU081900.1|BU081900
EST:     CTGAATTTGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAG                         GGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA
genomic: CTGAATTTGAGCCCCATACCAAAAGCCCATACATCATATTTATGCCTGAGgtgtctatat ... tttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaaaaaagtgtcttttttcttacttttgatttgtttggactgtttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT
               ttttttcttactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtctatatctgccttatcttattctaatgcttagaacatagattaaaaaaagtgtcttttttcttacttttgatttgtttggactgtttgctatagGGATCAAAAACACACATGGGAGGCACCATGCGCCTTGGATCTAGGAGGACATATTTCCAGACCAAGGAATGCAAATCTGCAAAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA