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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggtcttaccctgcaagttacatatcagagtagcttagttaactccccgactaatcaaaatggaatttgtcttctttctattgcttttgttatggcaagGTCTGGGAGGAGTATTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCT

Basic information

species Glycine max
transcript GLYMA16G19490.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19490.1 (Glycine max), 3'ss of exon 16
lower sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 14
taggtcttaccctgcaagttacatatcagagtagcttagttaactccccgactaatcaaaatggaatttgtctt---ctttctat-tgcttttgttatggcaagGTCTGGGAGGAGTATTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCT
            | | || |   | |  |  |   ||  ||   |       |  |      | ||||| |      || ||||| || ||   ||| |   |||| |||||||| | |||||||||||| || |||||||| ||||||||||| || ||| |||| |||||| ||||||||||||| ||||| ||||||||||
---------gtatactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccgactaatcaaaatggaatttgtcttctttctattgcttttgttatggcaagGTCTGGGAGGAGTATTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCT
    gactaat  putative branch site (score: 2)
                         tcttctttctattgct  putative PPT
       taatcaaaat  TA-rich tract