1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaaaataagagataagaacatctgtctcttgaactggttgagagatttcattgatttgatgcaaaaatgatgcattattcccacaacttatctttgcttgtcttcaaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG
species | Glycine max |
transcript | GLYMA16G08460.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|13790083|gb|BG652674.1|BG652674
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTTAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|15203110|gb|BI425878.1|BI425878
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|6725412|gb|AW309811.1|AW309811
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: TCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|6566798|gb|AW234430.1|AW234430
genomic: TCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAAEST: gi|7458625|gb|AW666075.1|AW666075
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: GAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|6566927|gb|AW234559.1|AW234559
genomic: GAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|298199413|gb|HO042776.1|HO042776
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGCGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|17401843|gb|BM178625.1|BM178625
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|19453207|gb|BM954617.1|BM954617
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|298174577|gb|HO017800.1|HO017800
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|16346357|gb|BI971952.1|BI971952
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|7326720|gb|AW620518.1|AW620518
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|6964515|gb|AW433208.1|AW433208
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTANAATACAAG
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
gcaaaaatgatgcattattcccacaacttatctttgcttgtcttcaaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG
aaaaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataagagataagaacatctgtctcttgaactggttgagagatttcattgatttgatgcaaaaatgatgcattattcccacaacttatctttgcttgtcttcaaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG