1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aaaaataaaatcctgatttttctgaggtgtgctactgctgttgatgctctccagagttttccctccctaggtattaatatattctttgatgcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAGCTTCTGTAGTGAACATTTGCTGTATCATGAAAAATGAAGC
species | Glycine max |
transcript | GLYMA16G04580.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|208211886|gb|GE013577.1|GE013577
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGTACTCATGTCAAG GAAAAATGGGCAAAGAAEST: gi|208290296|gb|GE082724.1|GE082724
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAA
EST: CTAGCACCCATGTTAAG G-AAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|15203972|gb|BI426749.1|BI426749
genomic: CTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|254328402|gb|GR835367.1|GR835367
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|208335893|gb|GE138472.1|GE138472
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|58019124|gb|CX705866.1|CX705866
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|24135575|gb|BU926085.1|BU926085
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTEST: gi|57574923|gb|CX547898.1|CX547898
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
EST: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAG GAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
genomic: AAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGgtatttccat ... gcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACT
gctctccagagttttccctccctaggtattaatatattctttgatgcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAGCTTCTGTAGTGAACATTTGCTGTATCATGAAAAATGAAGC
tgccttt CT-rich tract
tattaatatattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaataaaatcctgatttttctgaggtgtgctactgctgttgatgctctccagagttttccctccctaggtattaatatattctttgatgcctttgcagGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAGCTTCTGTAGTGAACATTTGCTGTATCATGAAAAATGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-aaaataa
- - - - - -cctgatt
- - - - - - - - - - -ctgaggt
- - - - - - - - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - ctctcca