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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatagtattgcttatggataatttgagagtattttccagaatgcgttgtttgaaaatatatttgaaattccatgaacctgttggatggatttttgaaagtgttcagtttaaggtgatcttttcacctttattaacttgtttgttctcttcacagGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTAACGTCAGCATTCCAAA

Basic information

species Glycine max
transcript GLYMA15G42640.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018599|gb|CX705341.1|CX705341
EST:     ATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAG                         GGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA
genomic: ATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGgtaagctata ... ctcttcacagGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA
EST: gi|18040165|gb|BM308459.1|BM308459
EST:     ATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAG                         GGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA
genomic: ATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGgtaagctata ... ctcttcacagGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA
EST: gi|15664711|gb|BI702082.1|BI702082
EST:     GTCAGAAGGTGGTTCTGAAAAAGAAAG                         GGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA
genomic: GTCAGAAGGTGGTTCTGAAAAAGAAAGgtaagctata ... ctcttcacagGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcagtttaaggtgatcttttcacctttattaacttgtttgttctcttcacagGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTAACGTCAGCATTCCAAA
                             tattaac  putative branch site (score: 1)
                                   cttgtttgttctcttc  CT-rich tract
                           tttattaacttgttt  TA-rich tract