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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtaacagtacactaattgtacttagtaattgatttgaaattgatgcattgaaattgagtttctatttttaattcttggttgtaacttatttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTATAGAAATTATTTTCCAATGTGGGCTTTGAGTGAATATCGTAAAAAAGTTA

Basic information

species Glycine max
transcript GLYMA15G10870.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21257172|gb|BQ454060.1|BQ454060
EST:     CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG                         GAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
genomic: CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAGgtacctctca ... tttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
EST: gi|51338033|gb|CO981899.1|CO981899
EST:     CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG                         GAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
genomic: CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAGgtacctctca ... tttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
EST: gi|16342550|gb|BI968145.1|BI968145
EST:     CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG                         GAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
genomic: CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAGgtacctctca ... tttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
EST: gi|5606831|gb|AI900929.1|AI900929
EST:     CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG                         GAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT
genomic: CAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAGgtacctctca ... tttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattgaaattgagtttctatttttaattcttggttgtaacttatttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTATAGAAATTATTTTCCAATGTGGGCTTTGAGTGAATATCGTAAAAAAGTTA
                                   ttgtaac  putative branch site (score: 2)
                                         cttattt  CT-rich tract
       aaattgagtttctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtaacagtacactaattgtacttagtaattgatttgaaattgatgcattgaaattgagtttctatttttaattcttggttgtaacttatttattgtagGAAGTCACAGGATTATTCTTGAAGACAGGCGCATTACACTACCCGCTCTATAGAAATTATTTTCCAATGTGGGCTTTGAGTGAATATCGTAAAAAAGTTA

- - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgta