1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atgttataataattcttgttatgttttcttttttatttgaaatagataaactagaattaagtttcatttttaattcttgtttgtgacttatttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATAGAAATATTTTTCCAATGTGGGCTTTGGCTGAATACCGCACAAATGTTT
species | Glycine max |
transcript | GLYMA15G07110.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|192296267|gb|FG989059.1|FG989059
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|192307614|gb|FG999653.1|FG999653
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTTTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|7028515|gb|AW458298.1|AW458298
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|8402861|gb|BE058495.1|BE058495
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|192306250|gb|FG995072.1|FG995072
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTTTATEST: gi|207709459|gb|GD690031.1|GD690031
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: AGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATEST: gi|192304631|gb|FG998717.1|FG998717
genomic: AGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
EST: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAA GAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
genomic: CAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAgtacctctta ... tttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTAT
ataaactagaattaagtttcatttttaattcttgtttgtgacttatttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATAGAAATATTTTTCCAATGTGGGCTTTGGCTGAATACCGCACAAATGTTT
ttttaat putative branch site (score: 3)
cttattt putative PPT
aattaagtttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttataataattcttgttatgttttcttttttatttgaaatagataaactagaattaagtttcatttttaattcttgtttgtgacttatttatggcagGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATAGAAATATTTTTCCAATGTGGGCTTTGGCTGAATACCGCACAAATGTTT
- - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt