1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgcaaagctatgcaaaatttgcatttcgtttccatttgtttattttcattacttcagttatatgaaccaaacttgtaatttgcttatgttgtatccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTGATCCATCTTCAACTGGAGAGTCACTTTGCTCTCTTCGATTTGCCGCTG
species | Glycine max |
transcript | GLYMA15G06880.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGTACCCTTTAGGAATTCAAAATTGACATACCTTCTCCAG CCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTEST: gi|193717341|gb|FK655623.1|FK655623
genomic: TGTACCCTTTAGGAATTCAAAATTGACATACCTTCTCCAGgtatgcaaag ... tccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCT
EST: AACAAGAGCATGTACCCTTTAGGAATTCAAAATTGACATACCTTCTCCAG CCATGTCTTGGTGGG-ATTCCAAA-CTTTGATGTTTGTEST: gi|193727538|gb|FK664462.1|FK664462
genomic: AACAAGAGCATGTACCCTTTAGGAATTCAAAATTGACATACCTTCTCCAGgtatgcaaag ... tccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGT
EST: TACCTTCACCAG CCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTEST: gi|193302218|gb|FK267389.1|FK267389
genomic: TACCTTCTCCAGgtatgcaaag ... tccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCT
EST: TACCTTCTCCAG CCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTEST: gi|208216380|gb|GE011668.1|GE011668
genomic: TACCTTCTCCAGgtatgcaaag ... tccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCT
EST: ATACCTTCTCCAG CCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCT
genomic: ATACCTTCTCCAGgtatgcaaag ... tccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCT
ttacttcagttatatgaaccaaacttgtaatttgcttatgttgtatccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTGATCCATCTTCAACTGGAGAGTCACTTTGCTCTCTTCGATTTGCCGCTG
ttatatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaaagctatgcaaaatttgcatttcgtttccatttgtttattttcattacttcagttatatgaaccaaacttgtaatttgcttatgttgtatccgtggcagCCATGTCTTGGTGGGGATTCCAAAACTTTGATGTTTGTGAACATCTCACCTGATCCATCTTCAACTGGAGAGTCACTTTGCTCTCTTCGATTTGCCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA