Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcagGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 18
gtttga-atttcaagt---gctaaagtgactggatctatctaaaaattg---ttatttattcttatcatgaaatgattttcagGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG
|||||  || | ||||   |||    || |||  | |   ||     ||   |  |  |||   | ||| |    |    ||||| || |||||||||||||| || ||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||
gtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtccatttacaccattattgaa----cagGCACTTGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 16
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 18
gtttga-atttcaagt---gctaaagtgactggatctatctaaaaattg---ttatttattcttatcatgaaatgattttcagGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG
|||||  || | ||||   |||    || |||  | |   ||     ||   |  | ||||   | ||| |    |    ||||| || |||||||||||||| || ||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||
gtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctatttacaccattattgaa----cagGCACTTGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 16
gtttg-aatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttca--gGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG
|||||   | |  |||  ||   |      || |||||     ||||| | | |  |||| |  || |   || ||  ||| || |||||||||||||| ||||||||||  || ||||| |||||||||||||| || ||| ||||||| || || ||||| || ||||| ||  |||
gtttgtggtgttcagt--tatgttcttgaaatgtatctg----ttgttttct-tgtttattaacaacttccttgcacagGCACTTGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 18
gtttgaatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcagGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG
||| ||   ||||    | |  | ||| | ||||| | ||  | ||  ||| |||| |  ||    |   ||||||||||| ||||||||||||||||| ||||||| ||||||||| || ||||| |||||||| ||| |||| ||||| ||| | | ||| ||||| |||||||
gttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcagGCTCTTGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcagGCTCTAGTTGAGTTCTTTGGAACCCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTG
            atctaaa  putative branch site (score: 3)
                                                ttttc  putative PPT
               taaaaattgttattta  TA-rich tract