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...aataatataatcataatgacattttataataaaacccccgagttgtatgtggcatttcctttgtgttttactcattgtcttatgccttttgcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTATACCCACAAAGACCTTGCAGCTTAATTTGAATGGTCTAACTGCTTTACT
species | Glycine max |
transcript | GLYMA14G07120.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|207792507|gb|GD765085.1|GD765085
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|6072812|gb|AW102199.1|AW102199
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|208286838|gb|GE083872.1|GE083872
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|16345479|gb|BI971074.1|BI971074
genomic: ATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|208074475|gb|GD868224.1|GD868224
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|208153176|gb|GD949189.1|GD949189
genomic: ATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAGGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTACTEST: gi|16342203|gb|BI967798.1|BI967798
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGT-CT
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTAEST: gi|19269540|gb|BM885796.1|BM885796
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
EST: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG GATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
genomic: ATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATGgtatgaactc ... gcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTA
tatgtggcatttcctttgtgttttactcattgtcttatgccttttgcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTATACCCACAAAGACCTTGCAGCTTAATTTGAATGGTCTAACTGCTTTACT
ccttttgc CT-rich tract
tgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataatataatcataatgacattttataataaaacccccgagttgtatgtggcatttcctttgtgttttactcattgtcttatgccttttgcaaatgcagGATACTAAAAGGAAGTGGACAAGTAGTAGATGGTGATAAAGGGATTGTCTATACCCACAAAGACCTTGCAGCTTAATTTGAATGGTCTAACTGCTTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - aaccccc
- - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcct